Short time-series expression miner analysis
Splet24. jun. 2011 · The significance of co-expression was then assessed by applying the clustering algorithm implemented in the short time-series expression miner STEM (version 1.3.6) [28,29] for co-expression profiling and a subsequent comparison of the number of genes assigned to a specific co-expression profile model to the expected number of … Splet07. nov. 2024 · To reveal the genetic mechanism of rejuvenation, we detected blood hormone indexes and gene expression levels in the hypothalamus and ovary of hens from five different periods during FM. Three hormones were identified as participating in FM.
Short time-series expression miner analysis
Did you know?
SpletPred 1 dnevom · Time-series expression analysis. The short time-series expression miner (STEM) was used to investigate the pattern of differentially abundant protein (DAP) expression during the 8 stages (Additional file 2: Table S2).The typical abundance patterns of proteins (P < 0.05) were profile 1, profile 4 and profile 5 (Fig. 4A).The expression … SpletShort Time-Series Expression Miner (STEM) Analysis. We performed STEM analysis 32 of the GSE54514 dataset in order to cluster gene modules in healthy controls, sepsis …
Splet19. sep. 2024 · Short time-series expression miner (STEM) analysis is a well-validated and widely used bioinformatics approach that identifies statistically significant time-dependent gene expression profiles and identifies significantly enriched biological pathways within elucidated profiles . An initial step of STEM is to select a distinct set of temporal ... SpletResults We introduce the Short Time-series Expression Miner (STEM) the first software program specifically designed for the analysis of short time series microarray gene …
Splet01. apr. 2015 · Gene clustering by short time series expression miner analysis. Each line in the figure represents an expression value of the corresponding gene. The abscissa represents the grade of glioma, and the ordinate represents the log2 value of the fold change. Negative values indicate downregulated expression, and positive values indicate … Splet Short Time-Series Expression Miner (STEM) analysis of gene expression profile. Squares of the same color indicate that the correlation is >0.7. (A) Trend analysis of genes. Gene...
Splet15. mar. 2024 · Short Time-Series Expression Miner (STEM) Analysis. For overlapping DEGs obtained in the previous step, significant similarity clustering of expression patterns was performed using Short Time-series Expression Miner (STEM) version 1.3.11. Citation 21 The similarity threshold was 0.8, and significance threshold was P < 0.05. DEGs in …
Splet05. apr. 2006 · In this paper we introduce the Short Time-series Expression Miner (STEM), the first software application designed specifically for the analysis of short time series … marty whaley adams gardenSplet22. avg. 2024 · Combined analysis with Short Time-series Expression Miner (STEM), the Cytoscape plugin cytoHubba, and screening of differentially expressed genes enabled identification of 63 hub genes predominantly altered in the early stage rather than the advanced stage. Validation of microarray results was carried out using qRT-PCR. hunter chiltonSplet05. apr. 2006 · A platform for Processing Expression of Short Time Series (PESTS), designed with a focus on usability and interpretability of analyses for the researcher, … marty wheeler nashvilleSpletWe obtained 285 lncRNAs with five significant temporal expression patterns whose expressions might correlate with severity of silicosis. KEGG analysis showed that … hunter chilton fitnessSpletFor the first time, transcriptome analysis based on short time-series expression miner (STEM) and histological observations were performed using the Holstein dairy cow mammary gland to explore gene expression patterns in this process of decrease (at peak, mid-, and late lactation). hunter chiropractic newton iaSplet05. apr. 2006 · In this paper we introduce the Short Time-series Expression Miner (STEM), the first software application designed specifically for the analysis of short time series gene expression datasets (3–8 time points). Data from short time series gene … hunter chimera antmarty whelan age