2024 The integron database

The integron database

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WebThe basic structure of an integron consists of an intI gene coding for an integrase, driven by a Pc promoter, and attI, an integron-associated primary recombination site, followed by gene cassettes. WebPereiraetal.BMCGenomics (2024) 21:495 Page6of14 Fig.4Geneontologyanalysisoftheintegron …

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WebJul 21, 2024 · Background: Integrons, especially the class 1 integrons, are major contributors to the acquisition and dissemination of antibiotic resistance genes (ARGs). However, comprehensive knowledge of the... WebINTEGRALL provides a public genetic repository for sequence data and nomenclature and offers to scientists an easy and interactive access to integron's DNA sequences, their … helsinki wilma

Integron - an overview ScienceDirect Topics

WebApr 21, 2009 · This database will help create more accurate annotations of bacterial genomes and facilitate a more representative sample of integron frequency and diversity. … WebNov 10, 2024 · The integron is a bacterial recombination system that allows acquisition, stockpiling and expression of promoterless genes embedded in cassettes. Some integrons, like the one found in the second chromosome of Vibrio cholerae, can be particularly massive, gathering hundreds of non-expressed cassettes. WebJan 4, 2024 · The integron database, Integrall 2 ( Moura et al., 2009) was used to analyze and assign integron sequences. Short-read whole genome sequencing All VIM-producing Enterobacterales were sequenced, using the Illumina MiSeq platform (Illumina Inc., San Diego, CA, United States). helsinki wilmaan

Frontiers Implication of different replicons in the spread of the …

Integron mediated multidrug resistance in extended spectrum …

WebBackground: Integrons are genomic elements that mediate horizontal gene transfer by inserting and removing genetic material using site-specific recombination. Integrons are … WebThe Integron Database: HOME INTRO LIST SEARCH/BLAST NOMENCLATURE GLOSSARY LINKS CONTACTS ABOUT: Nomenclature of Gene Cassettes. To avoid incorrect naming and the attribution of different names to identical gene cassettes, INTEGRALL suggests the following nomenclature scheme. helsinki webmail 365WebAug 6, 2024 · Yang, Y. et al. ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. helsinki wallpaper

"WebFeb 26, 2024 · In summary, integrons accelerate resistance evolution by rapidly generating combinatorial variation in cassette composition while maintaining genomic integrity. eLife digest From urinary tract infections to bacterial pneumonia, many diseases can now be treated through a course of antibiotics. " - The integron database

The integron database

Association of the genes encoding Metallo-β-Lactamase with the …

WebJun 2, 2016 · The similarity between attC sites is proportional to the number of cassettes in the integron, and is particularly low in clusters of attC sites lacking integron-integrases. The latter are unexpectedly abundant in genomes lacking integron-integrases or their remains, and have a large novel pool of cassettes lacking homologs in the databases. ... WebJan 27, 2011 · uploaded into the integron database: Annotation. of Cassette and Integron Data (ACID) (Joss et al., 2009). ACID contains publicly available integron. sequences and users can annotate integron-related.

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WebApr 1, 2024 · AMR present in the food chain, crops, animals and environment can be mobilized into bacterial pathogens of humans and animals through horizontal gene transfer and thereby affect human and animal ... WebThe present study describes integron mediated multiple antibiotic resistance in extended-spectrum β-lactamase producing clinical isolates of Klebsiella pneumoniae. One hundred and four clinical isolates of K. pneumoniae from two Iranian hospitals were screened for extended-spectrum β-lactamase production and susceptibility of the extended-spectrum β …

http://integrall.bio.ua.pt/ WebMar 24, 2024 · IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella Microorganisms. 2024 Mar 24;10 …

http://integrall.bio.ua.pt/?about WebApr 15, 2009 · INTEGRALL aims to be a repository for 20 years of data about integrons. We believe that this database is crucial to congregate information on the phylogeny of the …

WebThe INTEGRALL database is a freely available tool developed in order to provide an easy access to integron’s DNA sequences and genetic arrangements. Check here the assigned … Enter sequence below in FASTA format : Integrons are genetic systems that allow bacteria to capture and express gene … Please wait... Total 11957 records: Accession Nr. Organism Integrase gene … Nomenclature - INTEGRALL - Universidade de Aveiro The Integron Database: ... BIGSdb - Bacterial Isolate Genome Sequence … Contacts - INTEGRALL - Universidade de Aveiro About - INTEGRALL - Universidade de Aveiro Glossary - INTEGRALL - Universidade de Aveiro

WebFIGURE 12.5. Integron Analysis. Integrons are genetic elements that capture and express gene cassettes. The integron has three main components: an integrase gene under the … helsinki whiskey rye maltWebDec 2, 2011 · Here, these five types of integron associated with mobile elements and carrying a few cassettes mainly encoding antibiotic resistance genes are designated … helsinki whiskeyWebJul 20, 2024 · The integron database INTEGRALL contains, for example, roughly 1500 integrase and 8000 gene cassettes extracted from public sequence repositories [ 16 ]. … helsinki wellness center kalasatamaWebIntegrons are genetic systems that allow bacteria to capture and express gene cassettes (Fig.1). They typically consist of an intI gene encoding for an integrase that catalyses the incorporation or excision of gene cassettes by site-specific recombination, a recombination site attI and a promoter responsible for the expression of inserted gene cassettes (for a … helsinki wikitravelWebMar 24, 2024 · IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella Microorganisms. 2024 Mar 24;10 (4):700. doi: 10.3390/microorganisms10040700. Authors Bertrand Néron 1 , Eloi Littner 2 3 4 , Matthieu Haudiquet 2 5 , Amandine Perrin 1 2 4 , Jean Cury 2 6 , Eduardo P C Rocha 2 helsinki wien lennotWebJul 21, 2024 · The integron database is a compact database of both sequences and associated information for 2153 non-redundant whole integrons (Additional file 1: Table … helsinki yhdenvertaisuusWebWelcome to IntegronFinder’s documentation!¶ IntegronFinder is a program that detects integrons in DNA sequences. The program is available on a webserver Galaxy Pasteur, or by command line (IntegronFinder on github). helsinki xmas run